Single Cell Analysis, Made Simple

Complete your entire workflow in one software, from raw data to statistical significance, using classic flow cytometry tools seamlessly blended with the latest algorithms and visualizations
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Pricing
Cloud Platform
Classical Analysis
High Dimensional Analysis
Data Management

Modern Cloud Platform

Harness the power of cloud sharing and computing for faster, seamless data analysis—unlocking insights with ease.

Cloud Power, Zero Compromise

OMIQ’s cloud-powered platform eliminates crashes, lag, and hardware limitations, allowing seamless analysis of massive datasets from any computer. With cloud storage and parallel computing, you can run multiple analyses at once—boosting productivity while OMIQ handles the heavy lifting.

Cloud Sharing and Collaboration

Easily invite colleagues and assign roles with customizable permission levels. Share not just results, but the full context behind them — including datasets and workflows. Whether you're collaborating on analysis steps or reviewing outcomes, OMIQ makes it simple to share the entire process, securely and seamlessly.

Seamlessly Integrated Algorithms

Fully integrated clustering, dimension reduction, normalization, differential expression, trajectory, and data cleaning eliminate the need for external tools, ensuring seamless, reproducible analysis.

Auditable and Intuitive Workflows

OMIQ’s traceable workflows ensure reproducibility, automation, and collaboration. Every action is recorded for auditing and sharing, while real-time updates enable flexible, structured, and exploratory analyses without delays.

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Classical Analysis

OMIQ has you covered for your classic manual analysis needs, from data to insight

Compensation, Unmixing and Scaling

Create and apply spillover and unmixing matrices for traditional and spectral flow cytometry with step-by-step tools for accuracy and efficiency. Seamlessly adjust scaling within an integrated workflow.

Interactive Gating

Interactive gating tools streamline data filtering and population refinement with intuitive boundaries, subsampling, and batch-aligned metadata. Features like Backgating and Gating Hierarchy enhance visibility and interactivity for easier analysis.

Plot, Export, Share

Create detailed figures and reports with intuitive tools for QA, plotting, and layout. Batch export ensures you capture and share all results—boosting collaboration and reporting efficiency.

Export & Analyze

Export plots and reports in PNG, SVG, PDF, or PPT—plus stats like asymmetry and MFI. Seamless Prism integration enables deeper analysis and flexible visualization.

Flexible Data Input

OMIQ supports all major flow cytometry formats — including FCS, CSV, LMD, and data from spectral and mass cytometry. Pull in your data manually or automatically from local systems or the cloud, with built-in support for secure, automated ingestion. Once uploaded, your data is easy to share and always up to date — giving your team a single, reliable source of truth.

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High-Dimensional Power

Use OMIQ's suite of machine learning tools to bring order to complex high-dimensional data.

Dimensionality Reduction

OMIQ offers powerful integrated tools for dimensionality reduction, including t-SNE, opt-SNE, t-SNE-CUDA, UMAP, PCA, EmbedSOM, FIt-SNE, TriMap, Isomap, PaCMAP and PHATE. With opt-SNE, you can eliminate guesswork in parameter settings and consistently achieve great results.

Clustering

Automatically categorize data with algorithms including FlowSOM, Phenograph, PARC, SPADE. ClusterX and DensVM. Virtual concatenation simplifies analysis, while graphs and heatmaps reveal patterns and relationships.

Statistical Differential Analysis

Cut through the noise and uncover what matters with OMIQ’s powerful statistical methods and visualizations using SAM, edgeR, Citrus or diffcyt. Identify the strongest stratifying signals aligned with your clinical or experimental metadata, enabling you to focus on the most relevant insights for your analysis.

Trajectory Inference

Discover and visualize cellular development pathways with OMIQ’s trajectory inference tools including Wanderlust, Wishbone, Isomap and PHATE. Identify differentiation switch points and understand cell fate transitions to gain deeper insights into cellular processes.

Automated Data Cleaning

Everything starts with clean data. Incorporate algorithms such as flowAI, flowCut and PeacoQC into your workflow to help automate and standardize this key step of analysis.

Normalize Across Files

Tame batch effects and other unwanted signal differences between files in order to improve comparability for analysis and visualization. Natively integrated algorithms include fdaNorm, gaussNorm, CytoNorm and CyCombine.

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Data Management

Remove the data bottleneck with automations designed to scale your analysis pipelines

Prism Integration

Automate your GraphPad Prism analysis. OMIQ now supports preconfigured Prism files as templates. Simply upload your template and export completed Prism analysis from OMIQ, including reshaping your data, statistical analysis, graphs and layouts. Completed analysis, before you even open the file.

EasyPanel Integration

Validate single-stained controls by comparing actual vs. expected spectra with EasyPanel—ensuring accurate unmixing and reliable results in OMIQ.

Custom Autogating

Automated gating pipelines trained on your data, for your use. Replace time-costly and subjective manual gating to provide rapid, robust and reproducible results.

OMIQ Luma

Transform your flow cytometry data management with OMIQ Luma. Streamline every step of your data journey, from instrument to insight, with automated uploads, end-to-end traceability, and integrated analysis.

Experience the future of flow cytometry.
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