Single-cell analysis, made simple
OMIQ is a modern cytometry analysis platform that bridges the world of machine learning and analytical pipelines with that of classical manual analysis. It allows researchers to complete their entire workflow in one software, going from raw data to statistical significance, using their own expertise and familiar tools seamlessly blended with dozens of cutting-edge computational methods and visualizations to unlock deeper insights from data.
The OMIQ Advantage
Shrink time to result
Use a single software to go from raw data to statistical significance, and everything in between. Complete your analysis in days, not months.
Be a data leader
End reliance on bioinformatics staff. Elevate your skills and career with cutting-edge analytics and visualization.
Collaborate with ease
Choose permission levels and add colleagues with a click. Get to results faster, together.
Auditable and reproducible
All analysis in OMIQ is stored as a traceable sequence of steps called a Workflow. Workflows can be locked for safekeeping. Never wonder how a result was obtained.
Secure by design
Your data are safe with OMIQ's enterprise-grade security, including end-to-end and at-rest encryption, and organizational security-in-depth.
Customizable
With plugins, your code can run inside OMIQ. Share your algorithms with the world or keep them private for your enterprise only.
OMIQ Fundamentals
There is a lot to know about OMIQ. Let's start with the basics.
Flexible Data Input
Flexible Data Input
FCS, CSV, LMD. Regardless of your input format, OMIQ will accept it. Clinical and experimental metadata can be cross-referenced manually or automatically to help OMIQ extract the insights that matter.

Classic Analysis Options

Classic Analysis Options

OMIQ has you covered for your classic manual analysis needs. Use convenient functionality for adjusting compensation, setting scales, gating, making figures, processing visual and/or statistical batch reports, and more.
Reproducible Workflows
Reproducible Workflows
Every analysis is a sequence of operations on data. That sequence can be hard to track, trace, and audit, especially when moving data between multiple software packages. OMIQ Workflows solve this problem by allowing any sequence of operations on data to be executed and viewed in a single software platform. Workflows can be built dynamically or loaded from templates.
Fully Supported
Fully Supported
Get support seven days a week through email, phone, and video chat. OMIQ support staff can help with software questions and also offer professional-level advice on analytics.
High-Dimensional Power
Use OMIQ's suite of machine learning tools to bring order to complex high-dimensional data. OMIQ's modular architecture ensures that you have access to the latest and greatest analytical innovations, as they happen. All algorithms in OMIQ are available natively and do not require installation of additional plugins or software.
Dimensionality Reduction
Dimensionality Reduction
Dimensionality reduction is a mainstay of high-dimensional analysis. Run t-SNE, UMAP, PCA, EmbedSOM, FIt-SNE, TriMap, and more. Use opt-SNE to remove the guesswork with settings and get great results every time. Take advantage of GPU-accelerated processing options to get results over 100x faster in some cases.
Clustering
Clustering
Categorize data into populations automatically with FlowSOM, Phenograph, PARC, SPADE, ClusterX, and more. Use graph analysis or heatmaps to deepen your understanding of stucture and patterns within data.
Statistical Differential Analysis
Statistical Differential Analysis
Cut through the noise and find what matters. OMIQ has visualizations and statistical methods to find the strongest stratifying signals aligned with clinical or experimental metadata.
Trajectory Inference
Trajectory Inference
Discover and visualize paths of cellular development. Understand differentation switch points and cell fate.
Automated Data Cleaning
Automated Data Cleaning
Everything starts with clean data. Incorporate algorithms such as flowAI and flowCut into your workflow to help automate and standardize this key step of analysis.
Normalization
Normalization
Tame batch effects and other unwanted signal differences between files in order to improve comparability for analysis and visualization.
Learn More
Choose the right next steps for you.
Schedule a Demo
Get in contact with our team to schedule a demo of the OMIQ platform
Try OMIQ
Register for a free, full-featured trial of OMIQ and learn what's possible today. Use your own data or follow along with our tutorial and included demo data.
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